AlignMaster output ============================================================ Length of target sequence: 170 residues Searching sequences of known 3D structures Found 1l24_.pdb with P(N)=1e-34 Found 1qugA.pdb with P(N)=2e-34 Found 1l59_.pdb with P(N)=2e-34 Found 110l_.pdb with P(N)=2e-34 Found 1jquA.pdb with P(N)=2e-34 Found 1jquB.pdb with P(N)=2e-34 Found 1jquD.pdb with P(N)=2e-34 Found 1jquC.pdb with P(N)=2e-34 Found 127l_.pdb with P(N)=2e-34 Found 108l_.pdb with P(N)=3e-34 Found 1g0lA.pdb with P(N)=3e-34 Found 1l47_.pdb with P(N)=3e-34 Found 1l75_.pdb with P(N)=3e-34 Found 1l86_.pdb with P(N)=3e-34 Found 1l95_.pdb with P(N)=4e-34 Found 1quoA.pdb with P(N)=4e-34 Found 224l_.pdb with P(N)=4e-34 Found 130l_.pdb with P(N)=4e-34 Found 1l42_.pdb with P(N)=4e-34 Found 1l73_.pdb with P(N)=4e-34 Found 1g0mA.pdb with P(N)=4e-34 Found 1l43_.pdb with P(N)=4e-34 Found 115l_.pdb with P(N)=4e-34 Found 1l36_.pdb with P(N)=6e-34 Found 173l_.pdb with P(N)=6e-34 Found 1l66_.pdb with P(N)=6e-34 Found 1l87_.pdb with P(N)=6e-34 Found 137lB.pdb with P(N)=6e-34 Found 137lA.pdb with P(N)=6e-34 Found 1l92_.pdb with P(N)=6e-34 Found 233l_.pdb with P(N)=6e-34 Found 129l_.pdb with P(N)=6e-34 Found 114l_.pdb with P(N)=7e-34 Found 147l_.pdb with P(N)=7e-34 Found 161l_.pdb with P(N)=7e-34 Found 162l_.pdb with P(N)=7e-34 Found 171l_.pdb with P(N)=7e-34 Found 1l19_.pdb with P(N)=7e-34 Found 1l32_.pdb with P(N)=7e-34 Found 1l37_.pdb with P(N)=7e-34 Found 1l60_.pdb with P(N)=7e-34 Found 1l62_.pdb with P(N)=7e-34 Found 1l68_.pdb with P(N)=7e-34 Found 1l71_.pdb with P(N)=7e-34 Found 163l_.pdb with P(N)=7e-34 Found 1l74_.pdb with P(N)=7e-34 Found 1l72_.pdb with P(N)=7e-34 Found 1l88_.pdb with P(N)=7e-34 Found 1l94_.pdb with P(N)=7e-34 Found 1l70_.pdb with P(N)=7e-34 Found 221l_.pdb with P(N)=7e-34 Found 1l25_.pdb with P(N)=9e-34 Found 1l26_.pdb with P(N)=9e-34 Found 1l33_.pdb with P(N)=9e-34 Found 1l61_.pdb with P(N)=9e-34 Found 1l63_.pdb with P(N)=9e-34 Found 1l69_.pdb with P(N)=9e-34 Found 1quhA.pdb with P(N)=9e-34 Found 212l_.pdb with P(N)=9e-34 Found 216lA.pdb with P(N)=9e-34 Found 216lB.pdb with P(N)=9e-34 Found 1l23_.pdb with P(N)=9e-34 Found 219l_.pdb with P(N)=9e-34 Found 109l_.pdb with P(N)=9e-34 Found 113l_.pdb with P(N)=9e-34 Found 118l_.pdb with P(N)=9e-34 Found 123l_.pdb with P(N)=9e-34 Found 145l_.pdb with P(N)=9e-34 Found 166l_.pdb with P(N)=9e-34 Found 1c69A.pdb with P(N)=9e-34 Found 1c6aA.pdb with P(N)=9e-34 Found 1c6bA.pdb with P(N)=9e-34 Found 1c6pA.pdb with P(N)=9e-34 Found 1c6qA.pdb with P(N)=9e-34 Found 1c6tA.pdb with P(N)=9e-34 Found 1cv5A.pdb with P(N)=9e-34 Found 1dye_.pdb with P(N)=9e-34 Found 119l_.pdb with P(N)=9e-34 Found 1g0gA.pdb with P(N)=9e-34 Found 1jtmA.pdb with P(N)=9e-34 Found 1jtnB.pdb with P(N)=9e-34 Found 1jtnA.pdb with P(N)=9e-34 Found 1l38_.pdb with P(N)=1e-33 Found 1l45_.pdb with P(N)=1e-33 Found 1l46_.pdb with P(N)=1e-33 Found 1l76_.pdb with P(N)=1e-33 Found 1l85_.pdb with P(N)=1e-33 Found 1lyd_.pdb with P(N)=1e-33 Found 1qtcA.pdb with P(N)=1e-33 Found 217l_.pdb with P(N)=1e-33 Found 223l_.pdb with P(N)=1e-33 Found 225l_.pdb with P(N)=1e-33 Found 226l_.pdb with P(N)=1e-33 Found 1l93_.pdb with P(N)=1e-33 Found 2lzm_.pdb with P(N)=1e-33 Found 3lzm_.pdb with P(N)=1e-33 Found 4lzm_.pdb with P(N)=1e-33 Found 5lzm_.pdb with P(N)=1e-33 Found 6lzm_.pdb with P(N)=1e-33 Found 7lzm_.pdb with P(N)=1e-33 Extracting template sequences Running pair-wise alignments with target sequence Sequence identity of templates with target: 1l24_.pdb: 49.75 % identity 1qugA.pdb: 49.75 % identity 1l59_.pdb: 49.75 % identity 110l_.pdb: 50.25 % identity 1jquA.pdb: 49.75 % identity 1jquB.pdb: 49.75 % identity 1jquD.pdb: 49.75 % identity 1jquC.pdb: 49.75 % identity 127l_.pdb: 49.75 % identity 108l_.pdb: 49.3 % identity 1g0lA.pdb: 49.75 % identity 1l47_.pdb: 49.75 % identity 1l75_.pdb: 49.3 % identity 1l86_.pdb: 49.75 % identity 1l95_.pdb: 49.3 % identity 1quoA.pdb: 49.75 % identity 224l_.pdb: 49.3 % identity 130l_.pdb: 49.75 % identity 1l42_.pdb: 50.25 % identity 1l73_.pdb: 49.3 % identity 1g0mA.pdb: 49.3 % identity 1l43_.pdb: 50.25 % identity 115l_.pdb: 49.3 % identity 1l36_.pdb: 48.8 % identity 173l_.pdb: 50.25 % identity 1l66_.pdb: 49.3 % identity 1l87_.pdb: 49.3 % identity 137lB.pdb: 49.3 % identity 137lA.pdb: 49.3 % identity 1l92_.pdb: 49.75 % identity 233l_.pdb: 49.75 % identity 129l_.pdb: 49.3 % identity 114l_.pdb: 49.3 % identity 147l_.pdb: 49.3 % identity 161l_.pdb: 49.3 % identity 162l_.pdb: 49.3 % identity 171l_.pdb: 49.3 % identity 1l19_.pdb: 49.3 % identity 1l32_.pdb: 49.3 % identity 1l37_.pdb: 49.3 % identity 1l60_.pdb: 49.3 % identity 1l62_.pdb: 49.3 % identity 1l68_.pdb: 49.3 % identity 1l71_.pdb: 48.8 % identity 163l_.pdb: 49.3 % identity 1l74_.pdb: 48.8 % identity 1l72_.pdb: 49.3 % identity 1l88_.pdb: 49.3 % identity 1l94_.pdb: 49.3 % identity 1l70_.pdb: 49.3 % identity 221l_.pdb: 49.3 % identity 1l25_.pdb: 49.3 % identity 1l26_.pdb: 49.3 % identity 1l33_.pdb: 49.3 % identity 1l61_.pdb: 49.3 % identity 1l63_.pdb: 49.3 % identity 1l69_.pdb: 49.3 % identity 1quhA.pdb: 49.75 % identity 212l_.pdb: 49.3 % identity 216lA.pdb: 49.3 % identity 216lB.pdb: 49.3 % identity 1l23_.pdb: 49.3 % identity 219l_.pdb: 49.3 % identity 109l_.pdb: 49.3 % identity 113l_.pdb: 49.3 % identity 118l_.pdb: 48.8 % identity 123l_.pdb: 49.3 % identity 145l_.pdb: 49.75 % identity 166l_.pdb: 49.3 % identity 1c69A.pdb: 49.3 % identity 1c6aA.pdb: 49.3 % identity 1c6bA.pdb: 49.3 % identity 1c6pA.pdb: 49.3 % identity 1c6qA.pdb: 49.3 % identity 1c6tA.pdb: 49.3 % identity 1cv5A.pdb: 49.75 % identity 1dye_.pdb: 49.3 % identity 119l_.pdb: 49.3 % identity 1g0gA.pdb: 49.3 % identity 1jtmA.pdb: 49.3 % identity 1jtnB.pdb: 49.3 % identity 1jtnA.pdb: 49.3 % identity 1l38_.pdb: 49.75 % identity 1l45_.pdb: 49.3 % identity 1l46_.pdb: 49.3 % identity 1l76_.pdb: 49.3 % identity 1l85_.pdb: 49.3 % identity 1lyd_.pdb: 49.3 % identity 1qtcA.pdb: 48.8 % identity 217l_.pdb: 49.3 % identity 223l_.pdb: 49.3 % identity 225l_.pdb: 49.3 % identity 226l_.pdb: 49.3 % identity 1l93_.pdb: 49.3 % identity 2lzm_.pdb: 49.3 % identity 3lzm_.pdb: 49.3 % identity 4lzm_.pdb: 49.3 % identity 5lzm_.pdb: 49.3 % identity 6lzm_.pdb: 49.3 % identity 7lzm_.pdb: 49.3 % identity Looking for template groups Global alignment overview: Taget Sequence: |========================================================| 1l24_.pdb | ------------------------------------------------------- 1qugA.pdb | ------------------------------------------------------- 1l59_.pdb | ------------------------------------------------------- 110l_.pdb | ------------------------------------------------------- 1jquA.pdb | ------------------------------------------------------- 1jquB.pdb | ------------------------------------------------------- 1jquD.pdb | ------------------------------------------------------- 1jquC.pdb | ------------------------------------------------------- 127l_.pdb | ------------------------------------------------------- 108l_.pdb | ------------------------------------------------------- 1g0lA.pdb | ------------------------------------------------------- 1l47_.pdb | ------------------------------------------------------- 1l75_.pdb | ------------------------------------------------------- 1l86_.pdb | ------------------------------------------------------- 1l95_.pdb | ------------------------------------------------------- 1quoA.pdb | ------------------------------------------------------- 224l_.pdb | ------------------------------------------------------- 130l_.pdb | ------------------------------------------------------- 1l42_.pdb | ------------------------------------------------------- 1l73_.pdb | ------------------------------------------------------- 1g0mA.pdb | ------------------------------------------------------- 1l43_.pdb | ------------------------------------------------------- 115l_.pdb | ------------------------------------------------------- 1l36_.pdb | ------------------------------------------------------- 173l_.pdb | ------------------------------------------------------- 1l66_.pdb | ------------------------------------------------------- 1l87_.pdb | ------------------------------------------------------- 137lB.pdb | ------------------------------------------------------- 137lA.pdb | ------------------------------------------------------- 1l92_.pdb | ------------------------------------------------------- 233l_.pdb | ------------------------------------------------------- 129l_.pdb | ------------------------------------------------------- 114l_.pdb | ------------------------------------------------------- 147l_.pdb | ------------------------------------------------------- 161l_.pdb | ------------------------------------------------------- 162l_.pdb | ------------------------------------------------------- 171l_.pdb | ------------------------------------------------------- 1l19_.pdb | ------------------------------------------------------- 1l32_.pdb | ------------------------------------------------------- 1l37_.pdb | ------------------------------------------------------- 1l60_.pdb | ------------------------------------------------------- 1l62_.pdb | ------------------------------------------------------- 1l68_.pdb | ------------------------------------------------------- 1l71_.pdb | ------------------------------------------------------- 163l_.pdb | ------------------------------------------------------- 1l74_.pdb | ------------------------------------------------------- 1l72_.pdb | ------------------------------------------------------- 1l88_.pdb | ------------------------------------------------------- 1l94_.pdb | ------------------------------------------------------- 1l70_.pdb | ------------------------------------------------------- 221l_.pdb | ------------------------------------------------------- 1l25_.pdb | ------------------------------------------------------- 1l26_.pdb | ------------------------------------------------------- 1l33_.pdb | ------------------------------------------------------- 1l61_.pdb | ------------------------------------------------------- 1l63_.pdb | ------------------------------------------------------- 1l69_.pdb | ------------------------------------------------------- 1quhA.pdb | ------------------------------------------------------- 212l_.pdb | ------------------------------------------------------- 216lA.pdb | ------------------------------------------------------- 216lB.pdb | ------------------------------------------------------- 1l23_.pdb | ------------------------------------------------------- 219l_.pdb | ------------------------------------------------------- 109l_.pdb | ------------------------------------------------------- 113l_.pdb | ------------------------------------------------------- 118l_.pdb | ------------------------------------------------------- 123l_.pdb | ------------------------------------------------------- 145l_.pdb | ------------------------------------------------------- 166l_.pdb | ------------------------------------------------------- 1c69A.pdb | ------------------------------------------------------- 1c6aA.pdb | ------------------------------------------------------- 1c6bA.pdb | ------------------------------------------------------- 1c6pA.pdb | ------------------------------------------------------- 1c6qA.pdb | ------------------------------------------------------- 1c6tA.pdb | ------------------------------------------------------- 1cv5A.pdb | ------------------------------------------------------- 1dye_.pdb | ------------------------------------------------------- 119l_.pdb | ------------------------------------------------------- 1g0gA.pdb | ------------------------------------------------------- 1jtmA.pdb | ------------------------------------------------------- 1jtnB.pdb | ------------------------------------------------------- 1jtnA.pdb | ------------------------------------------------------- 1l38_.pdb | ------------------------------------------------------- 1l45_.pdb | ------------------------------------------------------- 1l46_.pdb | ------------------------------------------------------- 1l76_.pdb | ------------------------------------------------------- 1l85_.pdb | ------------------------------------------------------- 1lyd_.pdb | ------------------------------------------------------- 1qtcA.pdb | ------------------------------------------------------- 217l_.pdb | ------------------------------------------------------- 223l_.pdb | ------------------------------------------------------- 225l_.pdb | ------------------------------------------------------- 226l_.pdb | ------------------------------------------------------- 1l93_.pdb | ------------------------------------------------------- 2lzm_.pdb | ------------------------------------------------------- 3lzm_.pdb | ------------------------------------------------------- 4lzm_.pdb | ------------------------------------------------------- 5lzm_.pdb | ------------------------------------------------------- 6lzm_.pdb | ------------------------------------------------------- 7lzm_.pdb | ------------------------------------------------------- AlignMaster found 1 regions to model separately: 1: Using template(s) 108l_.pdb 109l_.pdb 110l_.pdb 113l_.pdb 114l_.pdb 115l_.pdb 118l_.pdb 119l_.pdb 123l_.pdb 127l_.pdb 129l_.pdb 130l_.pdb 137lA.pdb 137lB.pdb 145l_.pdb 147l_.pdb 161l_.pdb 162l_.pdb 163l_.pdb 166l_.pdb 171l_.pdb 173l_.pdb 1c69A.pdb 1c6aA.pdb 1c6bA.pdb 1c6pA.pdb 1c6qA.pdb 1c6tA.pdb 1cv5A.pdb 1dye_.pdb 1g0gA.pdb 1g0lA.pdb 1g0mA.pdb 1jquA.pdb 1jquB.pdb 1jquC.pdb 1jquD.pdb 1jtmA.pdb 1jtnA.pdb 1jtnB.pdb 1l19_.pdb 1l23_.pdb 1l24_.pdb 1l25_.pdb 1l26_.pdb 1l32_.pdb 1l33_.pdb 1l36_.pdb 1l37_.pdb 1l38_.pdb 1l42_.pdb 1l43_.pdb 1l45_.pdb 1l46_.pdb 1l47_.pdb 1l59_.pdb 1l60_.pdb 1l61_.pdb 1l62_.pdb 1l63_.pdb 1l66_.pdb 1l68_.pdb 1l69_.pdb 1l70_.pdb 1l71_.pdb 1l72_.pdb 1l73_.pdb 1l74_.pdb 1l75_.pdb 1l76_.pdb 1l85_.pdb 1l86_.pdb 1l87_.pdb 1l88_.pdb 1l92_.pdb 1l93_.pdb 1l94_.pdb 1l95_.pdb 1lyd_.pdb 1qtcA.pdb 1qugA.pdb 1quhA.pdb 1quoA.pdb 212l_.pdb 216lA.pdb 216lB.pdb 217l_.pdb 219l_.pdb 221l_.pdb 223l_.pdb 224l_.pdb 225l_.pdb 226l_.pdb 233l_.pdb 2lzm_.pdb 3lzm_.pdb 4lzm_.p! db 5lzm_.pdb 6lzm_.pdb 7lzm_.pdb Creating Batch files for ProMod (if any): Batch.1: residues 1 - 170 of submitted sequence. Exiting AlignMaster ProModII trace log for Batch.1 ============================================================ ProModII: 3.7b4 ProModII: Loading Template: 1l24_.pdb ProModII: Loading Template: 1qugA.pdb ProModII: Loading Template: 1l59_.pdb ProModII: Loading Template: 110l_.pdb ProModII: Loading Template: 1jquA.pdb ProModII: Loading Raw Sequence ProModII: Iterative Template Fitting ProModII: Iterative Template Fitting ProModII: Iterative Template Fitting ProModII: Iterative Template Fitting ProModII: Generating Structural Alignment ProModII: Aligning Raw Sequence ProModII: Refining Raw Sequence Alignment ProModII: doing complex assignment of backbone ProModII: N-terminal overhang trimmed for chain ' '. Start at residue: 6 ProModII: adding blocking groups ProModII: Weighting Backbones ProModII: Averaging Sidechains ProModII: Adding Missing Sidechains ProModII: connectivity problem (C-N > 3.0A) at residue: 53 ProModII: Trying Ligating with anchor residues VAL 56 and ASP 59 ProModII: Number of Ligations found: 1 ProModII: all loops are bad; continuing CSP with larger segment ProModII: Trying Ligating with anchor residues VAL 56 and SER 60 ProModII: Number of Ligations found: 20 ProModII: ACCEPTING loop 16: clash= 0 FF= -31.6 PP= -6.00 ProModII: Optimizing Sidechains ProModII: Dumping Preliminary Model ProModII: Adding Hydrogens ProModII: Optimizing loops and OXT (nb = 5) ProModII: Final Total Energy: -2720.340 KJ/mol ProModII: Removing Hydrogens ProModII: Fixing Atom Nomenclature ProModII: Dumping Sequence Alignment ***